| Embryonic 00-20 h | Aligned RNA-seq data from time-course (0-20 hours) developmental gene expression studies (GSE60478; GSE111748). |
| HISAT2 | RNA-seq data (SRR1971491) derived from Mnemiopsis embryos aligned using HISAT2. |
| CL2 | RNA-seq reads derived from Mnemiopsis embryos (between 15 and 30 hours post-fertilization) assembled into transcripts using Cufflinks. |
| StringTie | Aligned RNA-seq reads (from HISAT2 above) assembled into transcripts using StringTie. |
| TRN15-30hpf | RNA-seq reads derived from Mnemiopsis embryos (between 15 and 30 hours post-fertilization) assembled into transcripts using Trinity. |
| RACE | Experimentally-verified Mnemiopsis RACE (Rapid Amplification of cDNA Ends) transcripts. |
| EST | Publicly available Mnemiopsis ESTs from Genbank. |
| GBNT | Publicly available Mnemiopsis mRNAs and other non-EST sequences (e.g., rRNA, ncRNA) from Genbank. |
| 2.2 | Consensus Mnemiopsis gene models. |
| 2.2UF | Unincorporated Mnemiopsis gene models. |
| PFAM2.2 | Non-redundant Mnemiopsis protein domains derived from PFAM HMMscans using the 2.2 and 2.2UF datasets and the six-frame translations of the Mnemiopsis genome. |
| MASK | Genomic regions that have been repeat-masked using VMatch are highlighted in light blue. |
| SCF | Assembled genomic scaffolds (SCF) appear as solid black tracks with intermittent gaps shaded bright pink. |