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NHGRI Division of Intramural Research
Mnemiopsis Genome Project Portal
Databases Available for Mnemiopsis BLAST
Nucleotide Sequence Databases
- Main Scaffolds
- BLAST database containing all 5100 Mnemiopsis genomic scaffolds.
- Gene Models 2.2
- A BLAST database of consensus Mnemiopsis gene models.
- Unfiltered Gene Models (unincorporated predictions)
- A BLAST database of unincorporated Mnemiopsis gene models.
- Public ESTs
- A BLAST database containing all publicly available Mnemiopsis ESTs and mRNAs from GenBank.
- Mitochondrial genome
- A BLAST database containing the Mnemiopsis mitochondrial genome.
- Cufflinks-assembled transripts
- A BLAST database of Mnemiopsis Cufflinks-assembled RNA-seq transcripts.
- Trinity-assembled transcripts
- A BLAST database of Mnemiopsis Trinity-assembled RNA-seq transcripts.
Protein Sequence Databases
- Protein Models 2.2
- A BLAST database of translated proteins derived from the Mnemiopsis Gene Models 2.2 consensus gene models.
- Unfiltered Protein Models (unincorporated proteins)
- A BLAST database of unincorporated Mnemiopsis proteins derived from unincorporated gene models.
- Mitochondrial proteins
- A BLAST database of computationally derived Mnemiopsis mitochondrial proteins.
