MGP Portal Supplemental Perl Scripts



Click on a script name below to download the appropriate perl script as a text file:

Script NameDescription
scaffoldToGFF3.plused to reformat scaffold sequences from FASTA to GFF3
evmToGFF3.plparses a GFF3-formatted output file created by EVidenceModeler (EVM)[19] by collecting data about the start and end positions of predicted genes, using this information to create well-formed GFF3 files
cufflinksToGFF3.plused to parse predicted transcript assemblies from the GTF-formatted file created by Cufflinks
create_wiki_page.pla program demonstrates how users can create MediaWiki pages for displaying genomic data